rs29472113 SNP Detail

Summary

• ID
  rs29472113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:72907879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGGATGCA CAGGGAATGT TCCGTGGCGC TGTCTTTAAA
  AGAGCTACTG TTGGGGTAGA GAGATGGCTC AGTGGTTGAG AGCACATGCT GTTCTTACAG
  R
  GGAGCCAGAT TCAGTTCCCA GCACCCACAC AGTGGCTCAC AACTCTCCGT AAGCACACAC
  AGATGCACAT ATAGGCATAC ATGTAGGCAA AACAGTCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss38843450	mCV23952894	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss132418971	ENSMUSSNP6027257	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29472113					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:72907879 () rs orientation: forward

Symbol	Name	Function Class
4732414G09Rik	RIKEN cDNA 4732414G09 gene	within coordinates
Camkk1	calcium/calmodulin-dependent protein kinase kinase 1, alpha	1955 bp upstream
Cpgi3228	CpG island 3228	1442 bp proximal
P2rx1	purinergic receptor P2X, ligand-gated ion channel, 1	1853 bp downstream
Rr247151	regulatory region 247151	1121 bp proximal
Rr369285	regulatory region 369285	1659 bp downstream
Rr402708	regulatory region 402708	1678 bp upstream
Tssr102875	transcription start site region 102875	1933 bp upstream