rs29472220 SNP Detail

Summary

• ID
  rs29472220
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83327152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTGACCA GCCAGATACA
  CTTGAGCTGA CCTTTGTTCA ACCTTCCAAA ACCCTGCTCC CTTTATTTAT ACAAGCTAGG
  ATGTTCCAGA AGGTCCCAAC AGAGACTCAT ATGGATGATT TAAAGTCATC TGTATTGCCA
  AAAATGATGG ATCTTGTACC AATCCATCTT CCTCTCCCTC CCTCCCTCTA GGATCTCATT
  W
  ATAGCCCAGG CTGGCCTCAA ACTCACAATC ACCAATCACC TATCTCAGAT TCCTGAATAC
  TGGAAGCACA GGCATGCATC ACCTTTTGGT ATCAGGCTTC ACCTTGTTCT CTGGGCATGT
  TCTATGAACA GCGGGAAGCA GTGCTTGGGC TTGCTAATAA ATGCAGCTCA TTCTTTTCCG
  ATGCTGAACC CTCTCTTTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38843643	mCV23038080	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss323767160	CHEV_11_83249828	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29472220					SNP	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83327152 () rs orientation: forward

Symbol	Name	Function Class
1700020L24Rik	RIKEN cDNA 1700020L24 gene	1368 bp upstream
Tssr3609	transcription start site region 3609	1400 bp upstream
Tssr103697	transcription start site region 103697	1320 bp upstream
Tssr103698	transcription start site region 103698	1329 bp upstream
Tssr103699	transcription start site region 103699	1352 bp upstream
Tssr103700	transcription start site region 103700	1383 bp upstream