rs29472485 SNP Detail

Summary

• ID
  rs29472485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59090996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGT GTAGTCCTTG GAATTCTGAT
  Y
  GCCTGCCTCC AGCTTCCAAG GACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38842741	mCV25371428	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss323697496	CHEV_11_59013672	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29472485					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59090996 () rs orientation: forward

Symbol	Name	Function Class
2610507I01Rik	RIKEN cDNA 2610507I01 gene	within coordinates
Cpgi2954	CpG island 2954	1856 bp proximal
Rr448112	regulatory region 448112	1416 bp proximal
Tssr108206	transcription start site region 108206	1512 bp downstream
Tssr108207	transcription start site region 108207	1542 bp downstream
Tssr108208	transcription start site region 108208	1971 bp downstream
Tssr108209	transcription start site region 108209	1999 bp downstream