rs29472672 SNP Detail

Summary

• ID
  rs29472672
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95723916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGA GAAAAAAGAT AGGGTCGCCC
  S
  CACCTTGGTA GGGAAAGCAA ATGCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38842436	mCV23213499	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss132668276	ENSMUSSNP2466467	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29472672					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95723916 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	1525 bp distal
Cpgi3604	CpG island 3604	581 bp proximal
Phospho1	phosphatase, orphan 1	950 bp downstream
Rr369341	regulatory region 369341	98 bp upstream
Rr369342	regulatory region 369342	1153 bp upstream
Rr455203	regulatory region 455203	1177 bp distal
Tssr104395	transcription start site region 104395	1753 bp downstream
Tssr104396	transcription start site region 104396	1717 bp downstream
Tssr104397	transcription start site region 104397	1552 bp downstream
Tssr110283	transcription start site region 110283	1267 bp upstream
Tssr110284	transcription start site region 110284	1026 bp downstream
Tssr110285	transcription start site region 110285	1045 bp downstream
Tssr110286	transcription start site region 110286	1078 bp downstream