rs29472736 SNP Detail

Summary

• ID
  rs29472736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29476142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGGAAAAA CTCCAAAGTG
  AAGAAAAACA ACCAAAATCA TAACGAAAAA CGTTTACTTG ACTCGTACTC TCAACAAGTC
  ACTGAAACCT TCCCACGATC TTATGAAGTC CGTACCGTGA TTCCATACAA CAGATAAAGT
  CGAGGCACAG AGTTGACAAC ACACCTCTAA GTTCACACTG TGAACGGGCT GGGCCAGCAG
  Y
  CGGAGAACCC TAGCTCCACT ACCTACCCTG CCCACCCCGT TAGAGCTTTC TAGGGCCACC
  TTGCGCCGCT TCCTTCCAGC TAGATACACG CAAGTTTGAA GTACGTGTTC TTCCTGGAGA
  AGGGAGGGAA CTGCAGAGCA CCCGGTCCCC ACTGCAGGCC AGCAGCCGAA GCTGCAGGTT
  ACAGGACCAG CCATAGCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss38843746	mCV25279106	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss131895991	ENSMUSSNP2560055	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
ss323610910	CHEV_11_29426142	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29472736					SNP	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29476142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2674	CpG island 2674	within coordinates
Gm57396	predicted gene, 57396	within coordinates
Mtif2	mitochondrial translational initiation factor 2	266 bp upstream
Rr369145	regulatory region 369145	152 bp upstream
Rr444173	regulatory region 444173	within coordinates
Rr444174	regulatory region 444174	232 bp proximal
Rr444175	regulatory region 444175	326 bp proximal
Tssr100719	transcription start site region 100719	265 bp upstream
Tssr100720	transcription start site region 100720	281 bp upstream
Tssr107213	transcription start site region 107213	201 bp downstream