rs29472946 SNP Detail

Summary

• ID
  rs29472946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:46708431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTCAGG TGTGGTGAAC
  AATTCAGGCC AATGAACCAA GAGAGACCAA CAGAAAGGAT GGGAAGGGAA AGATCTTGGA
  TTTGTTTGTG GTGTATCCCA CCCTTATCTC TACTTGGTGA CCGATGCATC TTCTGTTGGT
  TACAGCCACA ACAACCAAAA AACCAACAAC AACCACCCGG CCAACCACCA CCCCTTATGT
  R
  ACCACCACCA CCCCAGAGCT GCTTCCAACA ACAGTCATGA CCACATCTGT TCTCCCAACC
  ACCACACCAC CCCAGACACT AGCCACCACT GCCTTCAGTA CAGCAGTGAC CACGTGCCCC
  TCAACAACAC CTGGCTCCTT CTCACAAGAA ACCACAAAAG GGTCCGCCTT CACTACAGGT
  GAGGATTGTC TGCTGTTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38845425	mCV25344025	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss132104542	ENSMUSSNP2929423	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
ss323660822	CHEV_11_46631106	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29472946					SNP	A	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:46708431 () rs orientation: forward

Symbol	Name	Function Class
Timd4	T cell immunoglobulin and mucin domain containing 4	Coding-Synonymous
Tssr101130	transcription start site region 101130	1895 bp downstream
Tssr101131	transcription start site region 101131	1866 bp downstream
Tssr101132	transcription start site region 101132	40 bp downstream
Tssr101133	transcription start site region 101133	14 bp downstream