rs29472994 SNP Detail

Summary

• ID
  rs29472994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115517483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTC CCTGCCTTTT ATGCACAAAA
  Y
  CCTGAGTTTA TAAACCCATT GTTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38843754	mCV24681390	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss132877508	ENSMUSSNP3174088	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss323863453	CHEV_11_115487971	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29472994					SNP	C	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115517483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4144	CpG island 4144	1056 bp proximal
Gm74427	predicted gene, 74427	1758 bp upstream
Rr231924	regulatory region 231924	1083 bp distal
Rr246115	regulatory region 246115	117 bp proximal
Rr369445	regulatory region 369445	945 bp upstream
Slc25a19	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	within coordinates
Tssr105892	transcription start site region 105892	1747 bp upstream
Tssr111780	transcription start site region 111780	1045 bp downstream
Tssr111781	transcription start site region 111781	1070 bp downstream
Tssr111782	transcription start site region 111782	1086 bp downstream
Tssr111783	transcription start site region 111783	1104 bp downstream
Tssr111784	transcription start site region 111784	1436 bp downstream
Tssr111785	transcription start site region 111785	1468 bp downstream
Tssr111786	transcription start site region 111786	1576 bp downstream
Tssr111787	transcription start site region 111787	1603 bp downstream