rs29473425 SNP Detail

Summary

• ID
  rs29473425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6017405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACGGGAA GAGTGGGGTG
  AGGGTGTAGG CCAGGCTTGC TCTTGGGGCT GATGTCGCCT CCCATAGTGC TGCTGAGGGC
  AGCTGCATTG GCTCTTTCTG AGCTTTGGTG GGAGAAGGAG GCAGGGCTGA ACAGCAGAAT
  ATAATTAGCA AAACAAACGA AACCCAATTG CACCCCTCCA GGAGTTAGGC TGTCTTTAGG
  Y
  TACCAAGTCA CACACCCTTC CACCAGCACT CGGGAAAGGA GTGTGGGAGC TGGAGGGAAG
  GCTTGTTGTG CAAGCCAAGG ACCCAAGTTC GATCTCCAGA ACGGATGTGA GAAAGCACAA
  GCCTGTGGTT CCAGCACTAG GGAAGGACAG TGGAAGATTC CTGGGGCTTA CTGGCCAGCC
  AGTTTAGCTA GATTGGCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss38843954	mCV22908210	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29473425					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6017405 () rs orientation: forward

Symbol	Name	Function Class
Camk2b	calcium/calmodulin-dependent protein kinase II, beta	1043 bp upstream
Cpgi2551	CpG island 2551	888 bp distal
Cpgi2552	CpG island 2552	866 bp proximal
Gm74282	predicted gene, 74282	within coordinates
Rr442230	regulatory region 442230	1878 bp distal
Rr442231	regulatory region 442231	1167 bp distal
Rr442232	regulatory region 442232	630 bp proximal
Rr442233	regulatory region 442233	1125 bp proximal
Rr442234	regulatory region 442234	1647 bp proximal
Tssr106682	transcription start site region 106682	1770 bp upstream
Tssr106683	transcription start site region 106683	1742 bp upstream
Tssr106684	transcription start site region 106684	1717 bp upstream
Tssr106685	transcription start site region 106685	1677 bp upstream
Tssr106686	transcription start site region 106686	1650 bp upstream
Tssr106687	transcription start site region 106687	1626 bp upstream
Tssr106688	transcription start site region 106688	1494 bp upstream
Tssr106689	transcription start site region 106689	1285 bp upstream
Tssr106690	transcription start site region 106690	1268 bp upstream
Tssr106691	transcription start site region 106691	1040 bp upstream
Tssr106692	transcription start site region 106692	1021 bp upstream
Tssr106693	transcription start site region 106693	994 bp upstream