rs29473823 SNP Detail

Summary

• ID
  rs29473823
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9823194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAGACAC AAAAGAGGCC
  TGAACAGATA CAAGAAGATT GAAATAATCC TATGCATCCT CTCTGATCAC CAAGAACTAA
  GGCAGATCTT CACTGACAAC ATAAATAATA AAGAGCCCAC ATACATGTGG AAGCTGTACA
  ACACTCTACT CAATGATAAC TTAGTCAAGG AAGAAATAAA GAAAGAAATT GAAGACTTTT
  W
  AAGTTCAATG AAAATGAAGC CACAACATAC CCAAACTTAT GGGACACAAT GAAAGCAGTC
  CTATGAGGAA AACTCATAGC TCTGAGTGCC TCCAAAAAGA AACAAGAGAG AGTATACACT
  AGCAGCTTGA AAGCTAGTGT ACCTAGCACA CCTGAAAGCT CTAGAACAAA AAGAAGCAAA
  TTTACCCAAG AGGAGTAGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38845957	mCV22917852	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss323558258	CHEV_11_9773197	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29473823					SNP	A	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9823194 () rs orientation: forward

Symbol	Name	Function Class
Tssr106858	transcription start site region 106858	543 bp downstream
Tssr106859	transcription start site region 106859	614 bp downstream