rs29474166 SNP Detail

Summary

• ID
  rs29474166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:84069937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATG AGACTGCTGT CCTTTGTACC
  Y
  TCCTTACCAC CAAACTTTAT TTACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss38846964	mCV24638957	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss132477367	ENSMUSSNP5620497	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323769370	CHEV_11_83992613	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29474166					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:84069937 () rs orientation: forward

Symbol	Name	Function Class
Acaca	acetyl-Coenzyme A carboxylase alpha	within coordinates
Cpgi3430	CpG island 3430	63 bp proximal
Rr453130	regulatory region 453130	within coordinates
Rr453131	regulatory region 453131	318 bp proximal
Rr453132	regulatory region 453132	865 bp proximal
Tssr103797	transcription start site region 103797	1458 bp downstream
Tssr103798	transcription start site region 103798	500 bp upstream
Tssr103799	transcription start site region 103799	547 bp upstream
Tssr103800	transcription start site region 103800	681 bp upstream
Tssr103801	transcription start site region 103801	741 bp upstream
Tssr103802	transcription start site region 103802	755 bp upstream
Tssr103803	transcription start site region 103803	1198 bp upstream