rs29474870 SNP Detail

Summary

• ID
  rs29474870
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69298702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGC TCTGTTAGGT ACTGCCAGAA
  K
  CACGCTTCCC CCTAGAATGG AGTAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38847724	mCV22780214	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss132355549	ENSMUSSNP6394662	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss323729414	CHEV_11_69221378	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29474870					SNP	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69298702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	643 bp proximal
Gm72933	predicted gene, 72933	1878 bp downstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	98 bp proximal
Rr369256	regulatory region 369256	1998 bp upstream
Rr402670	regulatory region 402670	719 bp upstream
Rr402671	regulatory region 402671	1483 bp upstream
Tssr3543	transcription start site region 3543	804 bp downstream
Tssr102455	transcription start site region 102455	998 bp downstream
Tssr102456	transcription start site region 102456	1035 bp upstream
Tssr102457	transcription start site region 102457	1405 bp upstream
Tssr102458	transcription start site region 102458	1798 bp upstream
Tssr102459	transcription start site region 102459	1818 bp upstream
Tssr102460	transcription start site region 102460	1851 bp upstream
Tssr102461	transcription start site region 102461	1894 bp upstream
Tssr102462	transcription start site region 102462	1922 bp upstream
Tssr108660	transcription start site region 108660	1965 bp upstream
Tssr108661	transcription start site region 108661	1106 bp upstream
Tssr108662	transcription start site region 108662	256 bp upstream
Tssr108663	transcription start site region 108663	227 bp upstream
Tssr108664	transcription start site region 108664	45 bp upstream
Tssr108665	transcription start site region 108665	682 bp downstream
Tssr108666	transcription start site region 108666	1270 bp downstream
Tssr108667	transcription start site region 108667	1516 bp downstream
Tssr108668	transcription start site region 108668	1537 bp downstream
Tssr108669	transcription start site region 108669	1552 bp downstream
Tssr108670	transcription start site region 108670	1671 bp downstream