rs29474910 SNP Detail

Summary

• ID
  rs29474910
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70400459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGATGGCCT TCTGTCTAAG ATAGCTGTAG TATATTAAAC
  CCAACCCTCC AGGAAACTAT AATCTGGATC GAGATAAGGC AGGCATAGAA ATAAATATAC
  W
  TTAAGGTCGA GTCCAACAGT GATTCGGGAA AGTATAGATA AGATTGTACA GTCCAAAGGG
  CTGAGGGCAT CATGGGCAGC TTCCCTAGAT GGACAATGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38846632	mCV22858025	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss132372152	ENSMUSSNP5920618	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
ss323735911	CHEV_11_70323135	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29474910					SNP	T	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70400459 () rs orientation: forward

Symbol	Name	Function Class
Gm73079	predicted gene, 73079	within coordinates
Rr235912	regulatory region 235912	142 bp proximal
Rr247104	regulatory region 247104	141 bp proximal
Tm4sf5	transmembrane 4 superfamily member 5	within coordinates
Tssr102717	transcription start site region 102717	58 bp upstream
Tssr102718	transcription start site region 102718	328 bp upstream
Tssr102719	transcription start site region 102719	547 bp upstream
Tssr102720	transcription start site region 102720	612 bp upstream
Tssr102721	transcription start site region 102721	1204 bp upstream
Tssr102722	transcription start site region 102722	1429 bp upstream
Tssr102723	transcription start site region 102723	1457 bp upstream
Tssr108976	transcription start site region 108976	1535 bp downstream