rs29475251 SNP Detail

Summary

• ID
  rs29475251
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86963782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TATGATACAT TTCAGGCAAT TTTAACCCGG TGCTATATTC ACCCTAAAGA AAAGTTTAAA
  GTGACCGAAA ATTTTCATAA TTTATACCTT AAGATTGAAA TGTCCTGGGC TGGTGAGATG
  GCTCAGTGGG TAAGAGCACC CGACTGCTCT TCCGAAGGTC CAGAGTTCAA ATCCCAGCAA
  CCACATGGTG GCTCACAACC ATCTGTAAAG AGATCTGATT CCCTCTTCTG GAGTGTCTGA
  AGACAGCTAC AGTGTACTTA CATATAATAA ATAAATAAAT CTTTAAAAAA AAAATTAAAA
  Y
  TATTACTTAT AAAAAAAAAA AATTGAAATG TCCTGAAGCC ACATTATTGA ACAGCAGTGA
  AGAAGCAAAG ATGTGGCCTG TTATAGTAAA TTAGAAGGCG GAGCGGACTC GCTTCAACCC
  TTATATACTT GATATTGTAT AAAAGCAATA TACTTTTGCA AGAGAAACAT CTTTAAAAAA
  ATACTGACTG ATCATAAGCT AAATATTTTA GTCTTTTAGA AGCCCACCAA CCATTGCTGG
  GGTAATGTTC AAAAATCAAA GTAAAACAAC AACCCAGGTG CTAGGTTTTG GAATCCTTAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38847815	mCV24679910	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29475251					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86963782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3481	CpG island 3481	400 bp proximal
Gdpd1	glycerophosphodiester phosphodiesterase domain containing 1	within coordinates
Gm11479	predicted gene 11479	1299 bp downstream
Gm74414	predicted gene, 74414	343 bp upstream
Tssr109941	transcription start site region 109941	1099 bp downstream
Tssr109942	transcription start site region 109942	1117 bp downstream
Tssr109943	transcription start site region 109943	1164 bp downstream