rs29475466 SNP Detail

Summary

• ID
  rs29475466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:113508712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGTGTTG ATATGGAACC
  AAAAGTACAG AAACCAAAAA AACCTGTACA CTGCCCCCTG GGGGTCACCT TGTGTATGAG
  AGAAGGAACT ACTGAGAACC AGGGGTTCCT GTTTTTGAAT GAGCTATTTT GCTAGACAAT
  ACACAAACTG CAGCAACAGG TGACGAACTT TTACAAGGTC TCATGACACT CGAAGAGAGC
  Y
  GAGCTCAGAA TGGACACTTC CTGGCTCTTC ATCCTTCTCT GTTCCCGGAA GGGTTTTTAA
  CTAGAGGGGG CAATAGGCAT TGTAACAACT GTGTCTCAGG GAGGAGGAGG CCTGAGCTCA
  CTCAGGGCCC CTTCTTTCCC CCAGGGCCAC TCCCCTCGTT CTGAGAGCTG CACTATTCAA
  CCCTTCAACC CCGCCCATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38850060	mCV22621273	ABI	CRAMUS_MOUSE	f	SNP	T		C	C
ss132840862	ENSMUSSNP2359685	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29475466					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:113508712 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4077	CpG island 4077			713 bp proximal
Rr403100	regulatory region 403100			within coordinates
Rr459386	regulatory region 459386			within coordinates
Rr459387	regulatory region 459387			516 bp proximal
Rr459388	regulatory region 459388			966 bp proximal
Rr459389	regulatory region 459389			1601 bp proximal
Slc39a11	solute carrier family 39 (metal ion transporter), member 11			Intron
				Noncoding-Transcript-Variant
Sstr2	somatostatin receptor 2			1456 bp upstream
Tssr105751	transcription start site region 105751			1432 bp upstream
Tssr105752	transcription start site region 105752			1494 bp upstream