rs29475491 SNP Detail

Summary

• ID
  rs29475491
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83327285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCCAAAA ATGATGGATC
  TTGTACCAAT CCATCTTCCT CTCCCTCCCT CCCTCTAGGA TCTCATTTAT AGCCCAGGCT
  GGCCTCAAAC TCACAATCAC CAATCACCTA TCTCAGATTC CTGAATACTG GAAGCACAGG
  CATGCATCAC CTTTTGGTAT CAGGCTTCAC CTTGTTCTCT GGGCATGTTC TATGAACAGC
  K
  GGAAGCAGTG CTTGGGCTTG CTAATAAATG CAGCTCATTC TTTTCCGATG CTGAACCCTC
  TCTTTGGATG GGAAACATTC CATTCCAAGC TTTCACACAT TCTCAGTGGG GTCCCCTCTC
  CAGGGGGTTC CTGGGTAGCA TGTAAGTGCA GCAGGCATGC TGCCCATATT CCCGTAAGAT
  TGTGTGTTTA CAGAGCTAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38849667	mCV23038078	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G	G
ss132469243	ENSMUSSNP1611397	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		G
ss323767162	CHEV_11_83249961	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29475491					SNP	T	T	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83327285 () rs orientation: forward

Symbol	Name	Function Class
1700020L24Rik	RIKEN cDNA 1700020L24 gene	1235 bp upstream
Tssr3609	transcription start site region 3609	1267 bp upstream
Tssr103697	transcription start site region 103697	1187 bp upstream
Tssr103698	transcription start site region 103698	1196 bp upstream
Tssr103699	transcription start site region 103699	1219 bp upstream
Tssr103700	transcription start site region 103700	1250 bp upstream