rs29475764 SNP Detail

Summary

• ID
  rs29475764
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115518925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC CCGTCCGGGC TCCTCAAGCT
  S
  AGTTCTCCCT CCCTCTCAGT GTAGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38847452	mCV24681664	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss132877524	ENSMUSSNP4921955	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323863458	CHEV_11_115489413	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29475764					SNP	G	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115518925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4144	CpG island 4144	within coordinates
Gm74427	predicted gene, 74427	316 bp upstream
Rr246115	regulatory region 246115	within coordinates
Rr369445	regulatory region 369445	within coordinates
Slc25a19	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	within coordinates
Tssr105892	transcription start site region 105892	305 bp upstream
Tssr111780	transcription start site region 111780	390 bp upstream
Tssr111781	transcription start site region 111781	361 bp upstream
Tssr111782	transcription start site region 111782	340 bp upstream
Tssr111783	transcription start site region 111783	308 bp upstream
Tssr111784	transcription start site region 111784	within coordinates
Tssr111785	transcription start site region 111785	26 bp downstream
Tssr111786	transcription start site region 111786	134 bp downstream
Tssr111787	transcription start site region 111787	161 bp downstream