rs29476136 SNP Detail

Summary

• ID
  rs29476136
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115052442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGC AGAACTGAAC AAAGCCATAG
  K
  CCAGTTTTTC CCACTAAGCC CCAGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38851073	mCV22627607	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G	G
ss132871966	ENSMUSSNP6204325	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29476136					SNP	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115052442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	1304 bp proximal
Gm72084	predicted gene, 72084	629 bp downstream
Nherf1	NHERF family PDZ scaffold protein 1	1725 bp upstream
Rab37	RAB37, member RAS oncogene family	within coordinates
Rr369433	regulatory region 369433	1227 bp upstream
Rr403111	regulatory region 403111	1446 bp upstream
Rr459780	regulatory region 459780	1402 bp distal
Rr459781	regulatory region 459781	536 bp distal
Rr459782	regulatory region 459782	138 bp distal
Rr459783	regulatory region 459783	1235 bp proximal
Tssr3727	transcription start site region 3727	1740 bp upstream
Tssr105840	transcription start site region 105840	1717 bp upstream
Tssr105841	transcription start site region 105841	1758 bp upstream
Tssr105842	transcription start site region 105842	1784 bp upstream
Tssr105843	transcription start site region 105843	1801 bp upstream
Tssr105844	transcription start site region 105844	1822 bp upstream
Tssr111730	transcription start site region 111730	1513 bp downstream