rs29476254 SNP Detail

Summary

• ID
  rs29476254
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:63880608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACGAATGACA AAGAACCATG GTCGTATGTT TTAGGATGAG TCCGGGCACC CATCTTAACA
  TAAGGACACC GTTTCTTTCA CTAGTGCAGG AAATGATGGA AGCAGTGTTT TTCAAATGGG
  GTAAGATTAA AAATTGGTTT TTTTTTTTTT TTTTTTTTTT TTAAATTGTA AGTGACAACA
  GCATAACAAA GGAAGTGGCT TTTCTGGTGC CAGGAAACAC AGGATCAGGC ATATGTTGAG
  TACAGACTGC CAACTGAGCT ACAGCTGTGA CTGAGACTTT TGTGTTTCAT AAATACTTTG
  K
  GTTTTATAAT ACAGTCAATA CGTAGTCCGG GCTGCCTTCA AGTTTGTGAT CCCTCCTCTT
  AGCCTTATAA CTACCAGGAT CATCGGTATG GACCACCATG GACGGCAACT GGTATTGTAT
  ACAGGCTATT GGCAGGTAAT TAAAACTGGG GGACTGTCCT CTGTACTTGT CTTGGGAAGG
  TGAGAAAAAG AATATAATTT TGTAAGTTTG TTCTCATTAG ATTTTATTTT AGCTCTATTT
  CACTTTTCAA CTCTAGTAAA AATAAAGAAA ATTTCAATGT TTAAAATATA AAGAGTATAT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss38850284	mCV23096845	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss132299014	ENSMUSSNP592527	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29476254					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:63880608 () rs orientation: forward

Symbol	Name	Function Class
Cox10	heme A:farnesyltransferase cytochrome c oxidase assembly factor 10	within coordinates
Gm57391	predicted gene, 57391	within coordinates
Rr449102	regulatory region 449102	111 bp distal
Rr449103	regulatory region 449103	within coordinates
Tssr102110	transcription start site region 102110	82 bp downstream
Tssr102111	transcription start site region 102111	53 bp downstream
Tssr102112	transcription start site region 102112	39 bp downstream
Tssr102113	transcription start site region 102113	10 bp downstream
Tssr102114	transcription start site region 102114	11 bp upstream
Tssr102115	transcription start site region 102115	92 bp upstream