rs29476660 SNP Detail

Summary

• ID
  rs29476660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70057716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACAGGGAA GCCAAGACTT CACACTGGTA ACTGGGCCAG
  GGTTGCCAGG GAGACCAGTG GGGCAGGGAA CGTGCAAGAC GCTTCACAGA GAGGGAGGAC
  R
  TTGGGCTTGG ATGACCTAAG TGGAAAGAGA TACAAGAGGA GAGTGTGGGA TTTAATTTCC
  CTTGATTGGA TTATGGGTGC CTCGATTCCA AGGGAGACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss38850510	mCV23532622	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss132366923	ENSMUSSNP643675	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323733886	CHEV_11_69980392	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs29476660					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70057716 () rs orientation: forward

Symbol	Name	Function Class
Clec10a	C-type lectin domain family 10, member A	within coordinates
Rr251315	regulatory region 251315	within coordinates
Tssr102659	transcription start site region 102659	227 bp downstream
Tssr102660	transcription start site region 102660	183 bp downstream
Tssr102661	transcription start site region 102661	106 bp downstream
Tssr102662	transcription start site region 102662	294 bp upstream
Tssr102663	transcription start site region 102663	312 bp upstream