rs29476989 SNP Detail

Summary

• ID
  rs29476989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70057700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTCTGGTC ACTGCTGCAC AGGGAAGCCA AGACTTCACA
  CTGGTAACTG GGCCAGGGTT GCCAGGGAGA CCAGTGGGGC AGGGAACGTG CAAGACGCTT
  Y
  ACAGAGAGGG AGGACGTTGG GCTTGGATGA CCTAAGTGGA AAGAGATACA AGAGGAGAGT
  GTGGGATTTA ATTTCCCTTG ATTGGATTAT GGGTGCCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss38849034	mCV23532615	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss132366915	ENSMUSSNP222739	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323733884	CHEV_11_69980376	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs29476989					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70057700 () rs orientation: forward

Symbol	Name	Function Class
Clec10a	C-type lectin domain family 10, member A	within coordinates
Rr251315	regulatory region 251315	within coordinates
Tssr102659	transcription start site region 102659	211 bp downstream
Tssr102660	transcription start site region 102660	167 bp downstream
Tssr102661	transcription start site region 102661	90 bp downstream
Tssr102662	transcription start site region 102662	310 bp upstream
Tssr102663	transcription start site region 102663	328 bp upstream