rs29477004 SNP Detail

Summary

• ID
  rs29477004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28802205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAGGGTCAG GGAAACTTAG TAGTAAATGT CTTTGCTACA
  GTCATCAACG CCTTCCATAC TTAGTAAGTT CTGCAGATCT GATCCTGTGC AGTACTGGAT
  R
  GCCTGTCACC AGTACTGGTC AGGATCACCA TTGGATGTCA ATATCTACTT AACCCACCCA
  CCCAGAAGAC AGAAGAGCCG TAATCACCTG AAAGCTGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38848720	mCV24782452	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss131883384	ENSMUSSNP4019835	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29477004					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28802205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2668	CpG island 2668	853 bp proximal
D11Mit172	DNA segment, Chr 11, Massachusetts Institute of Technology 172	397 bp proximal
Efemp1	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	999 bp upstream
Gm34185	predicted gene, 34185	within coordinates
Rr246450	regulatory region 246450	595 bp proximal
Tssr3451	transcription start site region 3451	1553 bp upstream
Tssr3452	transcription start site region 3452	1587 bp upstream
Tssr100686	transcription start site region 100686	984 bp upstream