rs29477544 SNP Detail

Summary

• ID
  rs29477544
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:85059935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATGATGTA TGTGACAATT TTGGGGGTTT GGGGTTTTGT
  TTGTTTGTTT GTTTATTTGT TGAGACAGAA TATCCATGTA GTCTGGGTGA CTAAAACTGA
  R
  TCTGTACTGA CAATAGGCCA GGCTGGACTT GAACTTGTAA TAGTCTTCTC CCTTCTCCAG
  AATGCTGAGA TTACAGGCAT GTGCGTCTGG TTTCTGTAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss38851369	mCV24662543	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss132490425	ENSMUSSNP2162119	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs29477544					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:85059935 () rs orientation: forward

Symbol	Name	Function Class
Chct1	CHD1 helical C-terminal domain containing 1	1295 bp upstream
Cpgi3451	CpG island 3451	995 bp proximal
Gm73307	predicted gene, 73307	506 bp downstream
Rr453329	regulatory region 453329	836 bp proximal
Rr453330	regulatory region 453330	1109 bp proximal
Rr453331	regulatory region 453331	1306 bp proximal
Tssr3620	transcription start site region 3620	1959 bp upstream
Tssr103818	transcription start site region 103818	1965 bp upstream
Tssr103819	transcription start site region 103819	1988 bp upstream