rs29477586 SNP Detail

Summary

• ID
  rs29477586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115055570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG GGTGGGGGAG GGAGCAGGAA
  Y
  AGGCCAGGCA GCGTCCTGCA GAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss38851672	mCV22627803	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss132871978	ENSMUSSNP5634157	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs29477586					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115055570 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	415 bp distal
Cpgi4110	CpG island 4110	within coordinates
Gm72084	predicted gene, 72084	422 bp upstream
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rr369433	regulatory region 369433	1714 bp downstream
Rr403111	regulatory region 403111	1381 bp downstream
Rr459783	regulatory region 459783	1393 bp distal
Rr459784	regulatory region 459784	within coordinates
Rr459785	regulatory region 459785	154 bp distal
Tssr3727	transcription start site region 3727	1373 bp downstream
Tssr105840	transcription start site region 105840	1396 bp downstream
Tssr105841	transcription start site region 105841	1361 bp downstream
Tssr105842	transcription start site region 105842	1331 bp downstream
Tssr105843	transcription start site region 105843	1325 bp downstream
Tssr105844	transcription start site region 105844	1295 bp downstream
Tssr111730	transcription start site region 111730	1609 bp upstream