rs29478301 SNP Detail

Summary

• ID
  rs29478301
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116425618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCACCATG CCCGGCCGTG
  TTTAAGTGTT TTGACAGAAC ACTTATATGT ATAAGCACTA GGCTGTGTAT TTGGCGCCCT
  TGAAGGCCAG AAGAGGGCGT AGAGATCCTC AGGAACTGGA CCTGGGAGTT CGGGACCACT
  GTGAGCCACC TTTCTGGTGC TGGAACTGAA CCTGGGTCTT GTAGAAGAGC AGCAAGTGCT
  Y
  TTACCTACCA AGCTCTCTCT CCAGCCCCAT GTGGTGGTGT TGTGTTTTGT TTGTAGTAGA
  ATGCCCTCGA GGACTGCTCC CACGGCCATG CAGAGTGCTG GTGCTGCTGA ACCCCCAGGG
  TGGCAAGGGC AAGGCTCTGC AGCTCTTCCA GAGCCGTGTG CAGCCCTTCC TGGAGGAGGC
  AGAGATAACC TTTAAACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38851197	mCV24685536	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss132887392	ENSMUSSNP4572787	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29478301					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116425618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4188	CpG island 4188	348 bp distal
Sphk1	sphingosine kinase 1	within coordinates
Sphkos	sphingosine kinase 1, opposite strand lncRNA	1715 bp upstream
Tssr3739	transcription start site region 3739	788 bp upstream
Tssr105968	transcription start site region 105968	1517 bp downstream
Tssr105969	transcription start site region 105969	1489 bp downstream
Tssr105970	transcription start site region 105970	820 bp downstream
Tssr105971	transcription start site region 105971	738 bp downstream
Tssr105972	transcription start site region 105972	723 bp downstream
Tssr111937	transcription start site region 111937	1669 bp upstream
Tssr111938	transcription start site region 111938	1083 bp upstream