rs29478331 SNP Detail

Summary

• ID
  rs29478331
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121280923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCCATC TTACATGAAG
  ATGTACAGAC ATTAAGAGGT ACAAGGAGAA GCAGTATCAA CTGACTGCCT TTCTTTCATC
  TCAACTGTAT ACATTGTTGC CATAGCCACC TCCACTGCTA TCCATCACAC TCCAGCTTCC
  TGTGAGGACT GAATACTGGT AGCTTTCTAG GAATCTTCCA GGTCTTCAGC ATTAGACCTG
  M
  AGCTGGGTCA TCTTGCTTAC TGGGGTATTA GGTTCTCAGC CTTTCCATCA TGCAAGCTCT
  ATTGTGTAAG TCAGTCTTAT AAATCACTCT TTATTTTACA CACACACACA CACACACACA
  CACACACACC CTCCTCCCCC ACACCACAAT TAGTTTTGTT CCTCTGAGAA TCAGGCTTAA
  TACAAATCCC TACAGTAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38852602	mCV24693231	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss132911640	ENSMUSSNP3946309	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29478331					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121280923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	1575 bp distal
Rab40b	Rab40B, member RAS oncogene family	1846 bp upstream
Rr461970	regulatory region 461970	1848 bp distal
Rr461971	regulatory region 461971	1356 bp distal
Tssr112458	transcription start site region 112458	1830 bp upstream