rs29478407 SNP Detail

Summary

• ID
  rs29478407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82326657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAACAGCGG ATGTCCTTCT GGGACACCTT CCTGGAACTG
  GCATGCCTGA TCCAGTCTAT ACAGAGAACA TGCATTCACA GATGTCCTTA TCATATCCCC
  R
  TTCCACTGGA CATTATATAT TTTTAGCAGG AATTTAGTAA GCTTGAGTCA GACTGGGACT
  TCTGAAGACA TTAAGCCGGC CTTACCAAAC TGCTCCCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38852496	mCV23446956	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss323765037	CHEV_11_82249333	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29478407					SNP	G	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82326657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3396	CpG island 3396	515 bp distal
D11Bhm141	DNA segment, Chr 11, Boehm 141	1595 bp proximal
D11Pas12	DNA segment, Chr 11, Pasteur Institute 12	1375 bp distal
D11Pas13	DNA segment, Chr 11, Pasteur Institute 13	698 bp proximal
D11Pas23	DNA segment, Chr 11, Pasteur Institute 23	1073 bp proximal
D11Pas49	DNA segment, Chr 11, Pasteur Institute 49	382 bp proximal
Tmem132e	transmembrane protein 132E	within coordinates
Tssr103577	transcription start site region 103577	998 bp downstream