rs29478626 SNP Detail

Summary

• ID
  rs29478626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83337061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCTCCCAA GAGCTAGAAT TAAAGGTAGG GAGGGGTCCC
  TACATCCTCC CATTAAAATT TCTAATTGAT TGTATTTTGT CTGCATATGT GTCTGTGTGT
  R
  CCACGTGTGC CTGTTGCCCT CAGAAGCCAA GAGGGTGTGG GATTACCTGG AACCGGTGTT
  ATGATTGTGA GCCACTGTGA ATGAGCCAAA GTCAGGTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38852044	mCV22343055	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss132469335	ENSMUSSNP2775460	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29478626					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83337061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3416	CpG island 3416	914 bp distal
Mmp28	matrix metallopeptidase 28 (epilysin)	within coordinates
Rr452961	regulatory region 452961	993 bp distal
Rr452962	regulatory region 452962	1372 bp proximal