rs29478822 SNP Detail

Summary

• ID
  rs29478822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:84070257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACC ATAGCTTCCA CTCCGCTCTC
  Y
  GCCGGGAGGT GGAGCCGTTG GGCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38851650	mCV24638959	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss323769372	CHEV_11_83992933	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29478822					SNP	C	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:84070257 () rs orientation: forward

Symbol	Name	Function Class
Acaca	acetyl-Coenzyme A carboxylase alpha	within coordinates
Cpgi3430	CpG island 3430	within coordinates
Rr453130	regulatory region 453130	within coordinates
Rr453131	regulatory region 453131	within coordinates
Rr453132	regulatory region 453132	545 bp proximal
Tssr103797	transcription start site region 103797	1778 bp downstream
Tssr103798	transcription start site region 103798	180 bp upstream
Tssr103799	transcription start site region 103799	227 bp upstream
Tssr103800	transcription start site region 103800	361 bp upstream
Tssr103801	transcription start site region 103801	421 bp upstream
Tssr103802	transcription start site region 103802	435 bp upstream
Tssr103803	transcription start site region 103803	878 bp upstream