rs29478839 SNP Detail

Summary

• ID
  rs29478839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69301731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCCCCGCC TCCCTCAACT CACACAGACA CACAGTCAGA
  GGCAGACACA ACTCCTCAAC CCACATACTG CTCACCACGG GTCCCGCGGA ATTTCCCCTC
  R
  GTCTCCCTCA CGGCCCCACC CCGCGCTGGG CAGCCCCGCC GCCGCACTCA CACCTGTTCC
  TCAGTCGCCG CCGCCGTCGG CTGCCTCGCC GTCCACTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38852444	mCV22780446	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss132355589	ENSMUSSNP4984317	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
ss323729423	CHEV_11_69224407	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29478839					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69301731 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	within coordinates
Gm72923	predicted gene, 72923	413 bp upstream
Gm72933	predicted gene, 72933	1008 bp upstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	within coordinates
Rr369256	regulatory region 369256	922 bp downstream
Rr402671	regulatory region 402671	1245 bp downstream
Tssr102456	transcription start site region 102456	1961 bp downstream
Tssr102457	transcription start site region 102457	1601 bp downstream
Tssr102458	transcription start site region 102458	1216 bp downstream
Tssr102459	transcription start site region 102459	1185 bp downstream
Tssr102460	transcription start site region 102460	1160 bp downstream
Tssr102461	transcription start site region 102461	1126 bp downstream
Tssr102462	transcription start site region 102462	1093 bp downstream
Tssr102463	transcription start site region 102463	323 bp downstream
Tssr102464	transcription start site region 102464	51 bp downstream
Tssr102465	transcription start site region 102465	39 bp upstream
Tssr102466	transcription start site region 102466	196 bp upstream
Tssr102467	transcription start site region 102467	414 bp upstream
Tssr102468	transcription start site region 102468	450 bp upstream
Tssr102469	transcription start site region 102469	492 bp upstream
Tssr102470	transcription start site region 102470	1060 bp upstream
Tssr108666	transcription start site region 108666	1745 bp upstream
Tssr108667	transcription start site region 108667	1494 bp upstream
Tssr108668	transcription start site region 108668	1483 bp upstream
Tssr108669	transcription start site region 108669	1460 bp upstream
Tssr108670	transcription start site region 108670	1336 bp upstream
Tssr108671	transcription start site region 108671	999 bp upstream
Tssr108672	transcription start site region 108672	525 bp upstream
Tssr108673	transcription start site region 108673	473 bp upstream
Tssr108674	transcription start site region 108674	452 bp upstream
Tssr108675	transcription start site region 108675	289 bp upstream
Tssr108676	transcription start site region 108676	238 bp upstream
Tssr108677	transcription start site region 108677	198 bp upstream
Tssr108678	transcription start site region 108678	169 bp upstream
Tssr108679	transcription start site region 108679	106 bp downstream
Tssr108680	transcription start site region 108680	760 bp downstream
Tssr108681	transcription start site region 108681	791 bp downstream
Tssr108682	transcription start site region 108682	834 bp downstream