rs29479209 SNP Detail

Summary

• ID
  rs29479209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75477943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTCATGGTCT TTATCACAGC AACAGAAAAC CACACTAGGA CAAGTCCCTG AATGCAGCCT
  GTTCCTGACT CCGGCCCTTA CGTGTGTCCT TTCTGCTGTG CATGGTCTTC CCCAGCATCT
  TGTGGATCTC TGGGATGCCG TCCCTCAAGG GACTCCTCAC ATACACCAGG TGCTGTCCAG
  TGTGATCCCA TCAAACACAA CTTCCACCTC CCACCCGTAC CCCAAAGCCT GCTGCCAAGC
  TACCGTTTTC TTCTCTTTCT GGGATTCTGG GATTGAACCT AGGGCCTCCT GCATACGAGG
  Y
  AAGTGCTCTG ACGAGCCACA TCCCAACCCT CTCTTCAGCT TTTATGAGAC AGCAACTTAC
  TAAGTTTTTC AGGCAGGCTT TGAACGTTCC ATCCTTCTGC CTCAGCTCCC AGACAGCTAG
  GAATTCCCAG ACAGCTAGCC TGTACCACTA GCTCTGGCAG CCCCTTTCCT TCCAAGTGCC
  TGCTACCCCA GCCATCACCT GCCTCCCCTC CATTTGATTA CCAGCTCCCT AGGGGCAAGA
  TAGTGCCAGC CTTCTTCTCT CTATTCAGGA TATCACAGGC TCTGGTACAC AGCAGCCCCA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss38853093	mCV22728832	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs29479209					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75477943 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3269	CpG island 3269	711 bp proximal
Gm53686	predicted gene, 53686	1242 bp upstream
Pitpna	phosphatidylinositol transfer protein, alpha	980 bp upstream
Rr402732	regulatory region 402732	791 bp upstream
Rr451215	regulatory region 451215	490 bp proximal
Rr451216	regulatory region 451216	991 bp proximal
Tssr102991	transcription start site region 102991	947 bp upstream
Tssr102992	transcription start site region 102992	1036 bp upstream