rs29479235 SNP Detail

Summary

• ID
  rs29479235
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88862974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTTCGAGGCC AGCCTGGTCT ACAAAGTGAG TTCCAGGACA GCCAGGGCTA CACAGAGAAA
  CCCTGTCTTA AAAAAACAAA ACAAAACAAC AACAAACAAC AATAACAACA ACAACAACAA
  AAAAAAAGAT TTAGAAAGGC AGCTTGAATT TGATGATCAC ATTTTGATGC TATGTCATTT
  AGCAGCTTTT TAATGCTTGA GATGAGGTTG AAGAACCAAG AAAGGTGTGA GTCTTTTCCT
  TAAAATACAC AAGGCCCCAA AGCAGCCTTC CCTGATTTTT GCAAAGATTG ACTTCAGTTG
  W
  AAAGAGAAGT CAGAAAAATA TTAATTGAAT CCTTGGCTTT TGAAAACGCT AGTTCAGAAT
  GCAAAAGGAT GATTAGGCAC CATCAGCACC AATAGAATAG ATTAGAGATA TTGGATCTCA
  CATTTATGAT GCTAATCTGA TAGTAAATTC TAAAAGTCTT AAGAAAAAAA ATCAAACTGT
  CAGATGTCTT AACTGTGGTA AGCAAGGGCA TTTGGAAAGG GATTATAGGG TAGGTGTTCC
  TAGAATCTGT TTTGTTTATT CCTAGAAATA ATCCAGAAGG CCTCAGCCCT CTGCAATATG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss38852695	mCV24310036	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29479235					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88862974 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	509 bp upstream
Coil	coilin	1787 bp upstream
Cpgi3523	CpG island 3523	1598 bp proximal
Gm10367	predicted gene 10367	228 bp downstream
Rr237596	regulatory region 237596	574 bp distal
Rr247482	regulatory region 247482	1226 bp proximal
Rr402857	regulatory region 402857	1800 bp downstream
Tssr104058	transcription start site region 104058	1885 bp downstream
Tssr104059	transcription start site region 104059	1771 bp upstream
Tssr104060	transcription start site region 104060	1780 bp upstream