rs29479625 SNP Detail

Summary

• ID
  rs29479625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71639274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGAGAGGGAG AATGGAGGAG GGGAGGGGAA AACCCCAGGA GCTGGAGTTA GAAGGCAACA
  CATAAACTTG GGATCTAATG ATTAAAGTCA CAAACAGGGA CAGATGGAAT AAACAGGCAA
  ACCCAGCGAG ACAGGAGTAG TACGAGCTGA GACTATTTTA ATTATTAGTC TTAGCCTTGC
  AGGGGAAGCA GGGGTGACCG CATTACTCAG GCAGGAGTAG CTGGATCTGT GTCAACACTG
  TTGTGGGACC ACCATAGAAG TCCATGGGGC ATTAGGATGC CTTTAACATA TGGGAGGAAA
  R
  TGATATGGAG CCAACTGCCA GTGGATCTTA GCTATGTGGC AAGGAGATCT AGGCACAGGG
  AGGGGCTTGG CATGGTTTGA AAGGGGTGTT GCTATCAGGG CTACCCAAGC TGGCTTCTTG
  AACCTTTATC TGCAACCAGT GCTAAAGAGG AAGGCTTTAT TCCAACACAG AAATACTCAT
  GCCCATTTTG ACACCCAAAC TGCCTTTCCC ACGCCCTTCT CAACTCACTA CTCTATGGGT
  TCCTCCTTGT ACCTCCTTTC GTAGTGTCTC TTGTCAAGTT GGCAGGCATA CCTACCTGGA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38854089	mCV23438291	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29479625					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71639274 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3209	CpG island 3209	1970 bp proximal
Rr236016	regulatory region 236016	1127 bp proximal
Rr241547	regulatory region 241547	within coordinates
Rr247127	regulatory region 247127	1326 bp proximal
Tssr102813	transcription start site region 102813	1466 bp upstream
Wscd1	WSC domain containing 1	1472 bp upstream