rs29480080 SNP Detail

Summary

• ID
  rs29480080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29455740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTATTACT AAATGTAAAT CCTTAATGCA AACTTTTTAA
  AAATTAATAC ATTGCGCTAG AGTATAAAAT TAGAACTTGT GAGCATAAAA ATGAAAAATA
  Y
  ACTATGTAGT CTTTATTCTA AAATCTGTTG TATTAAAAAC ATAGTCTTGC CTGGTGTATG
  CCTTTAACCC TGGCAGTTTG GGAGGCAGAG GTGAGTGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38854125	mCV25279730	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss131895770	ENSMUSSNP931861	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss323610829	CHEV_11_29405740	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29480080					SNP	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29455740 () rs orientation: forward

Symbol	Name	Function Class
Ccdc88a	coiled coil domain containing 88A	within coordinates
Rr239823	regulatory region 239823	1540 bp distal
Rr239824	regulatory region 239824	61 bp proximal
Rr249497	regulatory region 249497	540 bp distal
Tssr100714	transcription start site region 100714	1751 bp downstream
Tssr100715	transcription start site region 100715	169 bp downstream
Tssr100716	transcription start site region 100716	1952 bp upstream