rs29480339 SNP Detail

Summary

• ID
  rs29480339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118311476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGTA TTGCTATTGT GCAATACTAA
  Y
  CTTATCCGAA TGATGTTTCC ATAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38856480	mCV24191037	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss132901491	ENSMUSSNP3492697	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss323870314	CHEV_11_118281964	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29480339					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118311476 () rs orientation: forward

Symbol	Name	Function Class
Cant1	calcium activated nucleotidase 1	1564 bp upstream
Cpgi4233	CpG island 4233	1175 bp distal
Gm35598	predicted gene, 35598	1480 bp downstream
Gm72450	predicted gene, 72450	776 bp downstream
Rr403174	regulatory region 403174	1474 bp downstream
Rr461045	regulatory region 461045	1638 bp distal
Rr461046	regulatory region 461046	1553 bp distal
Rr461047	regulatory region 461047	882 bp distal
Tssr106139	transcription start site region 106139	1399 bp downstream
Tssr112169	transcription start site region 112169	1635 bp upstream
Tssr112170	transcription start site region 112170	1604 bp upstream
Tssr112171	transcription start site region 112171	1519 bp upstream