rs29480937 SNP Detail

Summary

• ID
  rs29480937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52169896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGGAGTTT AAGGGCTCTT AAGCCTTTCA GATCATAGGC
  TCCAACAAGA GCCCACAGAA GAGGCCAAAG ACTCATGTTG TCTCTGTCCT GTTTGGGATC
  R
  CACTGTCATG CAAAGCCTCT TGCCTGAGTT TCCCTACAGA ATACCTCACT CACGCCAGCA
  CCTGCCCCCA GCACCCAGCC TAGCGCATCA GCTAGGCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38854805	mCV24824194	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss132126783	ENSMUSSNP5784874	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss323669948	CHEV_11_52092571	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29480937					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52169896 () rs orientation: forward

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Rr386072	regulatory region 386072	1037 bp downstream
Tcf7	transcription factor 7, T cell specific	within coordinates
Tssr101334	transcription start site region 101334	932 bp upstream
Tssr107873	transcription start site region 107873	1905 bp upstream
Tssr107874	transcription start site region 107874	1698 bp upstream
Tssr107875	transcription start site region 107875	2 bp downstream
Tssr107876	transcription start site region 107876	1138 bp downstream
Tssr107877	transcription start site region 107877	1170 bp downstream