rs29480996 SNP Detail

Summary

• ID
  rs29480996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75546961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTCCTAGG GTCGGGACTC CGAGCCCCCT GAGCCAAGGG
  GCCTGCAAGG GGCGGTGCAG GGGGCGGGCT GGCCCCTCCC TCGGTTACGC CGCGGCCGAG
  Y
  ACAGACCAAG AGGCGCGGGC AGCGGAGCGG GGCGCCGGGT CCGGCAGGAT GCGCTACCGG
  GCATCGGTGA GCATGGGCGC GGGCAGGTTT GGGGTCCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38856801	mCV22728342	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss323751161	CHEV_11_75469637	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29480996					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75546961 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3272	CpG island 3272	1419 bp distal
Cpgi3273	CpG island 3273	within coordinates
Myo1c	myosin IC	within coordinates
Rr402734	regulatory region 402734	1259 bp downstream
Rr451246	regulatory region 451246	1842 bp distal
Rr451247	regulatory region 451247	252 bp distal
Rr451248	regulatory region 451248	within coordinates
Tssr103026	transcription start site region 103026	360 bp downstream
Tssr103027	transcription start site region 103027	279 bp downstream
Tssr103028	transcription start site region 103028	217 bp downstream
Tssr103029	transcription start site region 103029	198 bp downstream
Tssr103030	transcription start site region 103030	135 bp downstream
Tssr103031	transcription start site region 103031	98 bp downstream
Tssr103032	transcription start site region 103032	within coordinates