rs29481007 SNP Detail

Summary

• ID
  rs29481007
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116423321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG TCGGTGAGGA TCGTGGATCC
  S
  GATCATCCGC GGCAGGCAGC ATCTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss38854445	mCV24685526	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C	G
ss132887384	ENSMUSSNP2833423	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C		G		G
ss323865848	CHEV_11_116393809	CHEVERUD	SCREENING_POP	f	SNP						C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29481007					SNP	G	G	C	C	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116423321 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4188	CpG island 4188	within coordinates
Rr460326	regulatory region 460326	1560 bp distal
Rr460327	regulatory region 460327	574 bp distal
Rr460328	regulatory region 460328	within coordinates
Rr460329	regulatory region 460329	441 bp proximal
Rr460330	regulatory region 460330	572 bp proximal
Rr460331	regulatory region 460331	751 bp proximal
Rr460332	regulatory region 460332	1755 bp proximal
Sphk1	sphingosine kinase 1	within coordinates
Sphkos	sphingosine kinase 1, opposite strand lncRNA	within coordinates
Tssr3738	transcription start site region 3738	3 bp upstream
Tssr3739	transcription start site region 3739	1477 bp downstream
Tssr105960	transcription start site region 105960	1392 bp downstream
Tssr105961	transcription start site region 105961	653 bp downstream
Tssr105962	transcription start site region 105962	621 bp downstream
Tssr105963	transcription start site region 105963	599 bp downstream
Tssr105964	transcription start site region 105964	481 bp downstream
Tssr105965	transcription start site region 105965	70 bp downstream
Tssr105966	transcription start site region 105966	17 bp downstream
Tssr105967	transcription start site region 105967	55 bp upstream
Tssr105968	transcription start site region 105968	762 bp upstream
Tssr105969	transcription start site region 105969	790 bp upstream
Tssr105970	transcription start site region 105970	1467 bp upstream
Tssr105971	transcription start site region 105971	1542 bp upstream
Tssr105972	transcription start site region 105972	1563 bp upstream
Tssr111937	transcription start site region 111937	574 bp downstream
Tssr111938	transcription start site region 111938	1200 bp downstream