rs29481113 SNP Detail

Summary

• ID
  rs29481113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69913126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGCCGATA AGTGCAGGGT TGATATGCTA TAGAGGCCAT
  TAACGCCTTT TGCCCTGGGT GGGAATTTTA TGTTCTGTAG ACAGCTGATT TGGGGAGAAC
  Y
  CTCATGAGAG GGGTGAACAT TCTCTGGGAG AGAGGTTTGC AAGTTCAGGA GTTAGGGAAA
  GGATAGAAGA CTGAAGTGAT ATGGAGCAAT TTAGGGTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38853348	mCV22952727	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss132364043	ENSMUSSNP6591781	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		T
ss323732624	CHEV_11_69835802	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29481113					SNP	C	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69913126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	439 bp distal
Cpgi3169	CpG island 3169	1551 bp proximal
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	1205 bp downstream
Rr402686	regulatory region 402686	838 bp downstream
Tssr102634	transcription start site region 102634	1622 bp upstream