rs29481242 SNP Detail

Summary

• ID
  rs29481242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118308951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG AAGGAGTTCC CAAGGCAGGG
  Y
  CTGCAGTACA TGCAGGACAG TCTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38856818	mCV24191022	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss132901467	ENSMUSSNP1190155	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss323870308	CHEV_11_118279439	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29481242					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118308951 () rs orientation: forward

Symbol	Name	Function Class
Cant1	calcium activated nucleotidase 1	within coordinates
Cpgi4233	CpG island 4233	436 bp proximal
Gm72450	predicted gene, 72450	962 bp upstream
Rr403174	regulatory region 403174	750 bp upstream
Rr461044	regulatory region 461044	1841 bp distal
Rr461045	regulatory region 461045	within coordinates
Rr461046	regulatory region 461046	888 bp proximal
Rr461047	regulatory region 461047	973 bp proximal
Tssr106139	transcription start site region 106139	1098 bp upstream
Tssr112169	transcription start site region 112169	831 bp downstream
Tssr112170	transcription start site region 112170	893 bp downstream
Tssr112171	transcription start site region 112171	991 bp downstream