rs29481314 SNP Detail

Summary

• ID
  rs29481314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:4215118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACGTGATG GTGGATGAGG
  GCCGATTCAG ACCTGGTGTG CTCTGAGTAG TTCTGGTGCG GTGGCGCTGG GATGTGTGGG
  GTGTGGAGTC ACATGCTAAC CTATGTGTAC AGGAATGGTG AACCCCAGAC AGGGTCACCA
  ATGAAGAGAC AAGGTGTGTC AGGATGCAGG GAGAAAGAAA GGGTGCCAAC CTGGTGGCTT
  Y
  ATCACTCCAC TATTCGAGGC TCTGCCAAAA GACCACAAGA AACAAGAATC TGGAGGGGGC
  GGGGTGTATG TGTGGGGGCG GGGCAAGGAG AACAGACACA AGGCACCCTG CTAGGATAAG
  AACACCTGAG TAGATCCTGA ATATGGCTCA GGGCAGGAGC TAGGGACATG GGGGTGAGCG
  AAGGGGCTGG AGAAGCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss38854455	mCV22900091	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs29481314					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4215118 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2511	CpG island 2511	1336 bp proximal
Lif	leukemia inhibitory factor	within coordinates
Rr385518	regulatory region 385518	1500 bp upstream
Rr441796	regulatory region 441796	1524 bp distal
Rr441797	regulatory region 441797	475 bp distal
Rr441798	regulatory region 441798	289 bp proximal
Rr441799	regulatory region 441799	1487 bp proximal
Rr441800	regulatory region 441800	1988 bp proximal
Tssr100120	transcription start site region 100120	805 bp downstream
Tssr100121	transcription start site region 100121	126 bp upstream
Tssr100122	transcription start site region 100122	1363 bp upstream
Tssr100123	transcription start site region 100123	1407 bp upstream
Tssr100124	transcription start site region 100124	1549 bp upstream