rs29481816 SNP Detail

Summary

• ID
  rs29481816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28802992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAATCTGAA ATGAAAAATA AAGGACCAGT TCTGTTAATA
  GCTTTAATTT ATTCTCCCAG GAATCACTTG TTGAGCTAAA AGGAATTTAA GCCATTTCTG
  Y
  AAAGTCTAAA AGCTCCATGG AAGTGATATT TCGATATTAG TTGTGTCTCA AATTCCTGTG
  AATCAGGGTA CCAAGGGGCC TAATGCAGAG GATAACTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss38854739	mCV24782444	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss131883390	ENSMUSSNP4348826	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29481816					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28802992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2668	CpG island 2668	66 bp proximal
D11Mit172	DNA segment, Chr 11, Massachusetts Institute of Technology 172	241 bp distal
Efemp1	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	212 bp upstream
Gm34185	predicted gene, 34185	484 bp upstream
Rr246450	regulatory region 246450	within coordinates
Tssr3451	transcription start site region 3451	766 bp upstream
Tssr3452	transcription start site region 3452	800 bp upstream
Tssr100686	transcription start site region 100686	197 bp upstream
Tssr100687	transcription start site region 100687	1308 bp upstream