rs29482088 SNP Detail

Summary

• ID
  rs29482088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69048818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCTGTGTG GCCACTTCTG AATTCCTACA TCTTCCTTGA
  AAAGTGGGAG AAGGGCAGGG GGGCACTCTG CTGTCCAGTC TAGGAGTGCA GGATGCTAGG
  R
  AGTCCTGGGC GCTGACTCTT TTGCCCCCAA GATTCTAAAT AGCTCCTGCA GCCTCAAGCG
  ACTGGGACCT TAGGAAGGAT GGATAAGGCA GGGGTCTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38856256	mCV24154624	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss132350044	ENSMUSSNP1097496	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
ss323727820	CHEV_11_68971494	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29482088					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69048818 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	within coordinates
Cpgi3111	CpG island 3111	657 bp distal
Rr449891	regulatory region 449891	993 bp distal
Rr449892	regulatory region 449892	722 bp distal
Rr449893	regulatory region 449893	117 bp proximal
Tssr102419	transcription start site region 102419	1091 bp downstream
Tssr102420	transcription start site region 102420	1076 bp downstream
Tssr102421	transcription start site region 102421	941 bp downstream
Tssr102422	transcription start site region 102422	931 bp downstream
Tssr102423	transcription start site region 102423	911 bp downstream
Tssr102424	transcription start site region 102424	882 bp downstream