rs29482435 SNP Detail

Summary

• ID
  rs29482435
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69298344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCCACCTG CTGCAAGCGG CCAATCCGGG GTCCCAGCTC
  GGCGAAGCTT CCTCCATAGC GAAGGGCCCT ATGGTAGCAG CATACGGCTT CCTCACTGTC
  R
  TGCTCTGATT CATACAACTG TCCAAGCTGT TCCCACAACC CTGGCTGCGC TGGCTCCCGG
  AGCAATGCCT GGACACAGCC ATGTAGGGAT TCCAACTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38857284	mCV22780202	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss132355537	ENSMUSSNP1175760	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
ss323729411	CHEV_11_69221020	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29482435					SNP	G	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69298344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	1001 bp proximal
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	456 bp proximal
Rr402670	regulatory region 402670	1077 bp upstream
Rr402671	regulatory region 402671	1841 bp upstream
Tssr3543	transcription start site region 3543	1162 bp downstream
Tssr102455	transcription start site region 102455	640 bp downstream
Tssr102456	transcription start site region 102456	1393 bp upstream
Tssr102457	transcription start site region 102457	1763 bp upstream
Tssr108660	transcription start site region 108660	1607 bp upstream
Tssr108661	transcription start site region 108661	748 bp upstream
Tssr108662	transcription start site region 108662	88 bp downstream
Tssr108663	transcription start site region 108663	119 bp downstream
Tssr108664	transcription start site region 108664	295 bp downstream
Tssr108665	transcription start site region 108665	1040 bp downstream
Tssr108666	transcription start site region 108666	1628 bp downstream
Tssr108667	transcription start site region 108667	1874 bp downstream
Tssr108668	transcription start site region 108668	1895 bp downstream
Tssr108669	transcription start site region 108669	1910 bp downstream