rs29482639 SNP Detail

Summary

• ID
  rs29482639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88899858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTGTGTTC ACCTCCAAGC AGGACTTTGC CAAGTGGCTG
  CCCAGGGTGG CAGCATGAAG TGTCACAGAG TTCCTGGTGC TCCATACACA CACACACACA
  Y
  ACACACACAC AAACACACAC AACACAGGAG TGCAACCTTA GCGTTATCAG CAGTCTGACA
  GGAGCCCCCT CATCTTGGCC TCGTAGGATT CTATGAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss38857677	mCV22658009	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss132549855	ENSMUSSNP1811603	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs29482639					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88899858 () rs orientation: forward

Symbol	Name	Function Class
Rr454279	regulatory region 454279	468 bp proximal
Trim25	tripartite motif-containing 25	within coordinates
Tssr104065	transcription start site region 104065	903 bp downstream
Tssr104066	transcription start site region 104066	1861 bp upstream
Tssr104067	transcription start site region 104067	1937 bp upstream