rs29483420 SNP Detail

Summary

• ID
  rs29483420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101677695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTACAATA AAAAGCTAAG TAATGGAGTT TTGCAGGCAC
  CCTGCCCAAG GAAAGACAGG CAAGCCCAAG CAAATCCCGG CTTGGGGCGG ATGGAGCCAG
  Y
  TTAGGGAGGG GTGTGAGTTC CTAGACCAGG AGAAGTGGGG GAGGAAGGCA GGCAGTTCTA
  GGAAAAGATC TCTGATGTGG TCTCCATGAA GGTTCAGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38858357	mCV24798821	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss132730304	ENSMUSSNP3995801	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	C
ss323833817	CHEV_11_101648183	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29483420					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101677695 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3886	CpG island 3886	1061 bp distal
Etv4	ets variant 4	1498 bp upstream
Gm39392	predicted gene, 39392	220 bp upstream
Gm71843	predicted gene, 71843	within coordinates
Rr386582	regulatory region 386582	within coordinates
Rr402993	regulatory region 402993	1295 bp downstream
Rr457077	regulatory region 457077	1891 bp distal
Rr457078	regulatory region 457078	1008 bp distal
Rr457079	regulatory region 457079	within coordinates
Tssr105162	transcription start site region 105162	859 bp upstream
Tssr105163	transcription start site region 105163	895 bp upstream
Tssr110971	transcription start site region 110971	1687 bp upstream
Tssr110972	transcription start site region 110972	1649 bp upstream
Tssr110973	transcription start site region 110973	1628 bp upstream
Tssr110974	transcription start site region 110974	1580 bp upstream