rs29483506 SNP Detail

Summary

• ID
  rs29483506
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96183779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATCATG AAGGCTAAAT
  GGACAATCTG CCCAGGACTG CAGCCTGATA TCATTTTTCA AAGCCAGAAC TTACTCCATT
  TTCTATGCAA ATATCAGAAA AGCGAAACAA CCTCTCTCTC AAGTCTGAGA AGGGGAAACG
  ACGGCTCTCA GGTTGGGACA ATATTATCTG GAAGCTGAAG AAGATACCGA ACGCTCCTTT
  W
  TCCCTCCCTC CACATCCTTT TGAATCCGGA GGAGGGCAAA ATCCCCCAAG TTCTGCAAAG
  GTAAGGAAGA TTCTACAATT CTTATTCTTT TGCATCCTTT TCTTGCAGGG GGTGGGGCTT
  AGATTTTTCT CCCTCCTCCT CCCCCCATTT CAAGACAGGG TTGAACCCCA CCTCTGGGCG
  CTGCTGGGAG AGGCTTCCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38858660	mCV27575636	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29483506					SNP	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96183779 () rs orientation: forward

Symbol	Name	Function Class
2700088M07Rik	RIKEN cDNA 2700088M07 gene	1901 bp upstream
Cpgi3639	CpG island 3639	349 bp proximal
Cpgi3640	CpG island 3640	1584 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	within coordinates
Rr386515	regulatory region 386515	586 bp downstream
Rr455356	regulatory region 455356	467 bp distal
Rr455357	regulatory region 455357	within coordinates
Rr455358	regulatory region 455358	454 bp proximal
Rr455359	regulatory region 455359	681 bp proximal
Rr455360	regulatory region 455360	1740 bp proximal
Tssr104478	transcription start site region 104478	794 bp downstream
Tssr104479	transcription start site region 104479	445 bp downstream