rs29483540 SNP Detail

Summary

• ID
  rs29483540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95722273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC TCCGGGCATA TCTGGAATTC
  R
  GTCTGCTTGT GGGCTGGGAG CAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38859467	mCV23213482	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss132668260	ENSMUSSNP1568808	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29483540					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95722273 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	within coordinates
Phospho1	phosphatase, orphan 1	within coordinates
Rr369341	regulatory region 369341	1741 bp upstream
Rr455202	regulatory region 455202	745 bp distal
Rr455203	regulatory region 455203	445 bp proximal
Tssr3654	transcription start site region 3654	903 bp downstream
Tssr104394	transcription start site region 104394	679 bp downstream
Tssr104395	transcription start site region 104395	110 bp downstream
Tssr104396	transcription start site region 104396	74 bp downstream
Tssr104397	transcription start site region 104397	77 bp upstream
Tssr110283	transcription start site region 110283	354 bp downstream