rs29483905 SNP Detail

Summary

• ID
  rs29483905
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69910861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGTAGGAA GAGGGCAGGG CTGGGGGGGC TGGAACCCAT
  ACACGGGTAC AAGGGTGTCC CTGTGATCAG AGCCTGGAAA GAGTGGGATG GAAGCCCAAG
  R
  AGCTGAGGCC GTTTGCTCCC AGACTCTGGG ACTGGCAAGC TGGATGCCTG GTGTGTGGAG
  GGAGGCTTGG GCGGGTGGCA GGCAGCTGGG GGTTGGGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss38858471	mCV22952702	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss132364015	ENSMUSSNP1673278	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss323732615	CHEV_11_69833537	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs29483905					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69910861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	1220 bp proximal
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	760 bp upstream
Rr402686	regulatory region 402686	1126 bp upstream
Rr450197	regulatory region 450197	1146 bp distal
Rr450198	regulatory region 450198	931 bp proximal
Rr450199	regulatory region 450199	1366 bp proximal
Rr450200	regulatory region 450200	1988 bp proximal
Tssr102630	transcription start site region 102630	1943 bp downstream
Tssr102631	transcription start site region 102631	1636 bp downstream
Tssr102632	transcription start site region 102632	1551 bp downstream
Tssr102633	transcription start site region 102633	1188 bp downstream