rs29483942 SNP Detail

Summary

• ID
  rs29483942
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71639137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACTTGGGA TCTAATGATT AAAGTCACAA ACAGGGACAG
  ATGGAATAAA CAGGCAAACC CAGCGAGACA GGAGTAGTAC GAGCTGAGAC TATTTTAATT
  M
  TTAGTCTTAG CCTTGCAGGG GAAGCAGGGG TGACCGCATT ACTCAGGCAG GAGTAGCTGG
  ATCTGTGTCA ACACTGTTGT GGGACCACCA TAGAAGTCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss38858780	mCV23438297	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss132393472	ENSMUSSNP6473768	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss323743702	CHEV_11_71561813	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs29483942					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71639137 () rs orientation: forward

Symbol	Name	Function Class
Rr236016	regulatory region 236016	1264 bp proximal
Rr241547	regulatory region 241547	within coordinates
Rr247127	regulatory region 247127	1463 bp proximal
Tssr102813	transcription start site region 102813	1603 bp upstream
Wscd1	WSC domain containing 1	1609 bp upstream