rs29484006 SNP Detail

Summary

• ID
  rs29484006
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69621231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTGGAG AACTAGTTAA
  AGCTGATTAG AAGTTTTAAG TCCGTAGAAG CCGCATGTCA GATATAAAGC TGAAGTTCAC
  CTTGAACTTT ATTTTTAGAA CTGCACTAAT TAGAACAAAG TTAGACTCGT AAAGGCCTCT
  TCCTTGCACA GACGGGAATC TACAGCAGAA AGGCCATTTA CAAATCACAA CATATGCAGC
  K
  TCGTGAGCCA CATAGGTTGA ACAGAATGAA ACAGAAAGCT ACACCAAAGA CAACTTCCTG
  GGAAAGCCGT CTCACTCAGC TTCTGCCGTG TTTTCTCCAG CAAGGACCCT CCTAATGGGT
  AGACTAGTTC TGAAAATCAA ATTTAATTAA AAATTTTTAA AATCTGAGGG CTGGCTGCAA
  TTCAAAACCG AGTCTTTTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38864493	mCV22702564	ABI	CRAMUS_MOUSE	f	SNP		G	T				T		T
ss51017759	NES14400708	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T		T	T	T	T	T	T	T	T	G
ss137859502	ENSMUSSNP403073	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29484006					SNP	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51017759	NES14400708	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69621231 () rs orientation: forward

Symbol	Name	Function Class
Rr257073	regulatory region 257073	1031 bp distal
Rr257074	regulatory region 257074	170 bp proximal
Rr403327	regulatory region 403327	87 bp upstream